This directory contains a dump of the UCSC genome annotation
database for the April 2003 human genome assembled by NCBI
(UCSC version hg15).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/hg15/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any
purpose except for the following:
softberryGene.txt and softberryPep.txt - Free for academic
and nonprofit use. Commercial users please contact
Softberry Inc. at http://www.softberry.com.
Swiss-Prot data in knownGene.txt - The Swiss-Prot entries in the
Known Genes annotation track are copyrighted. They are
produced through a collaboration between the Swiss Institute
of Bioinformatics and the EMBL Outstation - the European
Bioinformatics Institute. There are no restrictions on their
use by non-profit institutions as long as their content is
in no way modified and this statement is not removed. Usage
by and for commercial entities requires a license agreement
(see http://www.isb-sib.ch/announce/ or send an email to
Apache/2.2.15 (CentOS) Server at hgdownload-test.sdsc.edu Port 80