This directory contains the Drosophila ananassae 15 July 2004 assembly
Files included in this directory:
md5sum.txt - MD5 checksum of these files to verify correct transmission.
droAna1.2bit - contains the complete D. ananassae/droAna1 genome sequence
in the 2bit file format. Repeats from RepeatMasker and Tandem Repeats
Finder (with period of 12 or less) are shown in lower case; non-repeating
sequence is shown in upper case. The utility program, twoBitToFa (available
from the kent src tree), can be used to extract .fa file(s) from
this file. A pre-compiled version of the command line tool can be
mrna.fa.gz - D. ananassae mRNA from GenBank. This sequence data is updated
once a week via automatic GenBank updates.
scaffoldFa.zip - The working draft sequence in one file per scaffold.
Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are in lower case while non-repeating sequence is
in upper case. The main assembly is in the chrN.fa files where N
is the name of the scaffold.
scaffoldFaMasked.zip - The working draft sequence in one file per
scaffold. Repeats are masked by capital Ns and non-repeating
sequence is shown in upper case.
scaffoldOut.zip - RepeatMasker .out file for scaffolds. These were
created with RepeatMasker at the -s sensitive setting.
scaffoldTrf.zip - Tandem Repeats Finder locations, filtered to keep repeats
with period less than or equal to 12, translated into one .bed file
xenoMrna.fa.gz - GenBank mRNAs from species other than that of
the genome. This sequence data is updated once a week via automatic
If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/droAna1/bigZips. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
These data have been freely provided by TIGR before publication for use
in the UCSC Genome Browser with the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
2. Users are free to use the data in scientific papers analyzing particular
genes and regions, provided that the TIGR is properly acknowledged.
3. TIGR reserves the right to publish the initial large-scale analyses of
the dataset, including large-scale identification of regions of
evolutionary conservation and large-scale genomic assembly.
4. Any redistribution of the data should carry this notice.
Apache/2.2.15 (CentOS) Server at hgdownload-test.sdsc.edu Port 80