This directory contains the assembly of the Drosophila willistoni genome
(droWil1, Feb. 2006), as well as repeat annotations.
Files included in this directory:
droWil1.2bit - contains the complete Drosophila willistoni/droWil1 genome
sequence in the 2bit file format. Repeats from RepeatMasker and Tandem
Repeats Finder (with period of 12 or less) are shown in lower case;
non-repeating sequence is shown in upper case. The utility program,
twoBitToFa (available from the kent src tree), can be used to extract .fa
file(s) from this file. A pre-compiled version of the command line tool
can be found at:
droWil1.agp.gz - Description of how the assembly was generated from
droWil1.fa.gz - "Soft-masked" assembly sequence in one file.
Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case.
droWil1.fa.masked.gz - "Hard-masked" assembly sequence in one file.
Repeats are masked by capital Ns; non-repeating sequence is shown in
droWil1.fa.out.gz - RepeatMasker .out file. RepeatMasker was run with the
-s (sensitive) setting.
droWil1.trf.bed.gz - Tandem Repeats Finder locations, filtered to keep repeats
with period less than or equal to 12, and translated into UCSC's BED
md5sum.txt - checksums of files in this directory
droWil1.chrom.sizes - Two-column tab-separated text file containing assembly
sequence names and sizes.
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/droWil1/bigZips. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Apache/2.2.15 (CentOS) Server at hgdownload-test.sdsc.edu Port 80