This directory contains the Sierra Leone 2014 (G3683/KM034562.1/eboVir3)
    assembly of the Ebola virus 2014 genome
      (eboVir3, West Africa 01 June 2014 EBOV/G3683/KM034562.1).

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/4887
    http://www.ncbi.nlm.nih.gov/genome/assembly/KM034561
    http://www.ncbi.nlm.nih.gov/bioproject/257197

Files included in this directory:

eboVir3.2bit - contains the complete Ebola virus 2014/eboVir3 genome sequence
    in the 2bit file format.  There are no repeats, there is no repeat masking.
    The utility program, twoBitToFa (available
    from the kent src tree), can be used to extract .fa file(s) from
    this file.  A pre-compiled version of the command line tool can be
    found at:
        http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
    See also:
        http://genome.ucsc.edu/admin/git.html
	http://genome.ucsc.edu/admin/jk-install.html

KM034562v1.agp.gz - Description of how the assembly was generated from
    fragments

KM034562v1.fa.gz - The single assembly sequence.  There are no repeats,
    there is no repeat masking

160sequences.tar.gz - fasta files for 158 sequences of Ebola,
    and two sequences for Marburg virus.  The file names are
    the genbank accession identifiers.  Extract sequences:
        tar xvzf 160sequences.tar.gz

md5sum.txt - checksums of files in this directory


eboVir3.chrom.sizes - Two-column tab-separated text file containing assembly
    sequence names and sizes.

------------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/eboVir3/bigZips. To download multiple files, use
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/bigZips/ .
For a single file, e.g. chromFa.tar.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/bigZips/chromFa.tar.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/bigZips/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/bigZips/chromFa.tar.gz' 
        -O chromFa.tar.gz

To unpack the *.tar.gz files:
    tar xvzf <file>.tar.gz
To uncompress the fa.gz files:
    gunzip <file>.fa.gz

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[   ]160sequences.tar.gz30-Sep-2014 10:43 717K 
[   ]KM034562v1.agp.gz18-Sep-2014 09:31 63  
[   ]KM034562v1.fa.gz30-Sep-2014 09:44 6.2K 
[TXT]README.txt20-Feb-2015 15:32 3.5K 
[   ]eboVir3.2bit18-Sep-2014 09:31 4.7K 
[   ]eboVir3.chrom.sizes18-Sep-2014 09:31 17  
[TXT]md5sum.txt30-Sep-2014 10:46 249  

Apache/2.2.15 (CentOS) Server at hgdownload-test.sdsc.edu Port 80