This file is from:

    http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/multiz160way/README.txt

This directory contains compressed multiple alignments of
158 Ebola and 2 Marburg virus sequences.

Files in this directory:

accession.to.sequenceIdentifier.txt - relating the accession name to
                                      sequence name

eboVir3.160way.nh - Phylogenetic tree used for multiz alignment.
    This is a simple straight binary tree of all the sequences used
    in the alignment.

eboVir3.strainNames.160way.nh - same phylogenetic tree, accession ids
    converted to strain naming scheme

eboVir3.multiz100way.maf.gz - alignments with gap annotation with
                              accession identifiers
strainName.multiz160way.maf.gz - same alignments with gap annotation
                                 with strain naming scheme

For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.

PhastCons conservation scores for these alignments are available at:
http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/phastCons160way

PhyloP conservation scores for these alignments are available at:
http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/phyloP160way

---------------------------------------------------------------
To download a large file or multiple files from this directory, we recommend
that you use rsync or ftp rather than downloading the files via our website.

Via rsync:
rsync -avz --progress \
        rsync://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/multiz160way/ ./

Via FTP:
    ftp hgdownload.cse.ucsc.edu
    user name: anonymous
    password: <your email address>
    go to the directory goldenPath/eboVir3/multiz160way

To download multiple files from the UNIX command line, use the "mget" command.
    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)
Use the "prompt" command to toggle the interactive mode if you do not want
to be prompted for each file that you download.

---------------------------------------------------------------
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the individual
genome assemblies, see http://genome.ucsc.edu/goldenPath/credits.html.
---------------------------------------------------------------
[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt28-Oct-2014 10:52 2.3K 
[TXT]accession.to.sequenceIdentifier.txt22-Oct-2014 10:59 3.8K 
[   ]eboVir3.160way.nh30-Sep-2014 11:06 3.4K 
[   ]eboVir3.multiz100way.maf.gz30-Sep-2014 11:07 287K 
[   ]eboVir3.strainNames.160way.nh30-Sep-2014 11:08 4.1K 
[TXT]md5sum.txt22-Oct-2014 11:22 358  
[   ]strainName.multiz160way.maf.gz30-Sep-2014 11:07 361K 

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