This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/liftOver.gz .

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
hg15ToHg16.over.chain.gz file contains the liftOver data needed to
convert hg15 (Human Build 33) coordinates to hg16 (Human Build 34).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/hg19/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/hg19/liftOver/ .
For a single file, e.g. hg19ToHg18.over.chain.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/hg19/liftOver/hg19ToHg18.over.chain.gz .
    (Hg18 is merely an example here, not necessarily existing.)

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/liftOver/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/liftOver/hg19ToHg18.over.chain.gz'  
        -O hg19ToHg18.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz 
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.
[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt20-Mar-2009 10:19 2.3K 
[   ]hg19ToAilMel1.over.chain.gz04-Feb-2010 16:31 78M 
[   ]hg19ToAllMis0.over.chain.gz15-Nov-2011 14:51 19M 
[   ]hg19ToAllMis1.over.chain.gz28-Jun-2013 14:03 17M 
[   ]hg19ToAllSin1.over.chain.gz04-Sep-2013 01:47 16M 
[   ]hg19ToAmaVit1.over.chain.gz28-Jun-2013 01:34 7.7M 
[   ]hg19ToAnaPla1.over.chain.gz27-Jun-2013 23:26 7.1M 
[   ]hg19ToAnoCar1.over.chain.gz30-May-2009 22:56 8.0M 
[   ]hg19ToAnoCar2.over.chain.gz19-Apr-2011 13:16 7.8M 
[   ]hg19ToApaSpi1.over.chain.gz28-Aug-2013 09:49 8.8M 
[   ]hg19ToAplCal1.over.chain.gz09-Jun-2009 12:31 1.9M 
[   ]hg19ToAraMac1.over.chain.gz29-Jun-2013 22:50 7.0M 
[   ]hg19ToAstMex1.over.chain.gz03-Sep-2013 01:51 3.0M 
[   ]hg19ToBalAcu1.over.chain.gz19-Aug-2016 03:03 80M 
[   ]hg19ToBosTau4.over.chain.gz04-Jun-2009 12:27 81M 
[   ]hg19ToBosTau6.over.chain.gz16-May-2011 20:08 82M 
[   ]hg19ToBosTau7.over.chain.gz23-Jan-2012 14:42 81M 
[   ]hg19ToCHM1.over.chain.gz24-Jun-2013 15:36 4.2M 
[   ]hg19ToCalJac1.over.chain.gz14-May-2009 12:57 52M 
[   ]hg19ToCalJac3.over.chain.gz11-Feb-2010 13:46 50M 
[   ]hg19ToCamFer1.over.chain.gz13-Jul-2013 00:17 79M 
[   ]hg19ToCanFam2.over.chain.gz14-May-2009 01:08 88M 
[   ]hg19ToCanFam3.over.chain.gz04-Jul-2012 02:20 87M 
[   ]hg19ToCanFamPoodle1.over.chain.gz09-Jun-2009 02:52 74M 
[   ]hg19ToCapHir1.over.chain.gz17-Jul-2013 07:11 81M 
[   ]hg19ToCavPor3.over.chain.gz04-Jun-2009 15:20 83M 
[   ]hg19ToCerSim1.over.chain.gz19-Oct-2012 14:06 82M 
[   ]hg19ToCheMyd1.over.chain.gz28-Aug-2013 09:57 7.7M 
[   ]hg19ToChiLan1.over.chain.gz30-Aug-2013 03:00 85M 
[   ]hg19ToChlSab1.over.chain.gz30-Jun-2013 11:38 36M 
[   ]hg19ToChoHof1.over.chain.gz05-Jun-2009 14:20 67M 
[   ]hg19ToChrAsi1.over.chain.gz09-Jul-2013 12:31 67M 
[   ]hg19ToChrPic1.over.chain.gz30-Aug-2013 00:47 11M 
[   ]hg19ToColLiv1.over.chain.gz29-Jun-2013 18:08 7.5M 
[   ]hg19ToConCri1.over.chain.gz10-Jul-2013 10:42 72M 
[   ]hg19ToCriGri1.over.chain.gz01-Sep-2013 02:51 71M 
[   ]hg19ToDanRer5.over.chain.gz26-May-2009 19:49 6.4M 
[   ]hg19ToDanRer6.over.chain.gz10-Jul-2009 11:40 7.7M 
[   ]hg19ToDanRer7.over.chain.gz18-Dec-2010 12:42 6.9M 
[   ]hg19ToDanRer10.over.chain.gz25-Sep-2015 08:30 7.2M 
[   ]hg19ToDasNov2.over.chain.gz27-May-2009 14:12 67M 
[   ]hg19ToDasNov3.over.chain.gz09-Jul-2013 13:45 83M 
[   ]hg19ToDipOrd1.over.chain.gz29-May-2009 19:38 58M 
[   ]hg19ToEchTel1.over.chain.gz29-Jun-2012 16:16 54M 
[   ]hg19ToEchTel2.over.chain.gz17-Jun-2013 22:34 61M 
[   ]hg19ToEleEdw1.over.chain.gz09-Jul-2013 18:57 56M 
[   ]hg19ToEptFus1.over.chain.gz31-Aug-2013 19:47 70M 
[   ]hg19ToEquCab2.over.chain.gz04-Jun-2009 13:02 82M 
[   ]hg19ToEriEur1.over.chain.gz30-May-2009 07:11 46M 
[   ]hg19ToEriEur2.over.chain.gz09-Jul-2013 08:24 53M 
[   ]hg19ToFalChe1.over.chain.gz27-Jun-2013 22:13 7.8M 
[   ]hg19ToFalPer1.over.chain.gz27-Jun-2013 22:21 7.9M 
[   ]hg19ToFelCat3.over.chain.gz04-Jun-2009 15:32 67M 
[   ]hg19ToFelCat4.over.chain.gz08-Jun-2010 11:22 75M 
[   ]hg19ToFelCat5.over.chain.gz27-Feb-2014 13:53 86M 
[   ]hg19ToFicAlb2.over.chain.gz29-Jun-2013 19:23 7.6M 
[   ]hg19ToFr2.over.chain.gz20-May-2009 16:19 3.9M 
[   ]hg19ToFr3.over.chain.gz20-Aug-2013 13:07 3.9M 
[   ]hg19ToGadMor1.over.chain.gz01-Sep-2013 02:22 4.2M 
[   ]hg19ToGalGal3.over.chain.gz14-May-2009 09:12 7.4M 
[   ]hg19ToGalGal4.over.chain.gz29-Jun-2013 23:12 7.5M 
[   ]hg19ToGasAcu1.over.chain.gz14-May-2009 13:56 4.5M 
[   ]hg19ToGeoFor1.over.chain.gz29-Jul-2012 14:41 7.2M 
[   ]hg19ToGorGor1.over.chain.gz22-Mar-2009 02:59 27M 
[   ]hg19ToGorGor3.over.chain.gz17-Oct-2011 12:44 15M 
[   ]hg19ToHapBur1.over.chain.gz03-Sep-2013 00:01 2.8M 
[   ]hg19ToHetGla2.over.chain.gz17-Jul-2013 07:11 84M 
[   ]hg19ToHg17.over.chain.gz09-Nov-2012 15:45 341K 
[   ]hg19ToHg18.over.chain.gz26-Jul-2010 11:37 226K 
[   ]hg19ToHg38.over.chain.gz31-Dec-2013 23:08 222K 
[   ]hg19ToJacJac1.over.chain.gz16-Jul-2013 22:27 71M 
[   ]hg19ToLatCha1.over.chain.gz16-Jul-2013 02:41 6.4M 
[   ]hg19ToLepOcu1.over.chain.gz02-Sep-2013 23:44 3.2M 
[   ]hg19ToLepWed1.over.chain.gz12-Jul-2013 08:40 85M 
[   ]hg19ToLetCam1.over.chain.gz19-Sep-2013 14:04 3.4M 
[   ]hg19ToLipVex1.over.chain.gz27-Aug-2013 13:45 81M 
[   ]hg19ToLoxAfr2.over.chain.gz28-May-2009 11:21 68M 
[   ]hg19ToLoxAfr3.over.chain.gz22-Jul-2009 12:24 79M 
[   ]hg19ToMacEug1.over.chain.gz31-May-2009 04:35 18M 
[   ]hg19ToMacEug2.over.chain.gz11-Jul-2013 14:27 16M 
[   ]hg19ToMacFas5.over.chain.gz30-Jun-2013 18:50 35M 
[   ]hg19ToMayZeb1.over.chain.gz03-Sep-2013 00:19 2.8M 
[   ]hg19ToMelGal1.over.chain.gz28-Mar-2011 13:01 5.4M 
[   ]hg19ToMelUnd1.over.chain.gz27-Jun-2013 22:46 7.3M 
[   ]hg19ToMesAur1.over.chain.gz31-Aug-2013 23:32 66M 
[   ]hg19ToMicMur1.over.chain.gz22-May-2009 19:16 71M 
[   ]hg19ToMicOch1.over.chain.gz27-Aug-2013 05:57 67M 
[   ]hg19ToMm9.over.chain.gz13-May-2009 20:56 75M 
[   ]hg19ToMm10.over.chain.gz07-Mar-2012 18:40 75M 
[   ]hg19ToMonDom5.over.chain.gz29-May-2009 06:34 32M 
[   ]hg19ToMusFur1.over.chain.gz12-Jul-2013 08:09 86M 
[   ]hg19ToMyoDav1.over.chain.gz01-Sep-2013 02:38 71M 
[   ]hg19ToMyoLuc1.over.chain.gz04-Jun-2009 18:38 63M 
[   ]hg19ToMyoLuc2.over.chain.gz30-Aug-2013 01:44 69M 
[   ]hg19ToNeoBri1.over.chain.gz03-Sep-2013 00:52 2.8M 
[   ]hg19ToNomLeu1.over.chain.gz05-Nov-2011 01:05 26M 
[   ]hg19ToNomLeu3.over.chain.gz22-Mar-2013 16:40 26M 
[   ]hg19ToOchPri2.over.chain.gz30-May-2009 00:54 59M 
[   ]hg19ToOchPri3.over.chain.gz18-Jun-2013 03:01 67M 
[   ]hg19ToOctDeg1.over.chain.gz07-Jul-2013 18:02 80M 
[   ]hg19ToOdoRosDiv1.over.chain.gz13-Jul-2013 01:36 86M 
[   ]hg19ToOrcOrc1.over.chain.gz03-Jun-2016 21:39 80M 
[   ]hg19ToOreNil2.over.chain.gz28-Aug-2013 20:32 4.3M 
[   ]hg19ToOrnAna1.over.chain.gz27-May-2009 01:17 18M 
[   ]hg19ToOryAfe1.over.chain.gz09-Jul-2013 12:31 75M 
[   ]hg19ToOryCun1.over.chain.gz29-May-2009 06:43 67M 
[   ]hg19ToOryCun2.over.chain.gz12-Aug-2009 21:48 78M 
[   ]hg19ToOryLat2.over.chain.gz22-May-2009 18:25 4.4M 
[   ]hg19ToOtoGar1.over.chain.gz15-May-2009 02:08 77M 
[   ]hg19ToOtoGar3.over.chain.gz02-Jul-2013 14:37 86M 
[   ]hg19ToOviAri1.over.chain.gz16-Apr-2010 16:21 57M 
[   ]hg19ToOviAri3.over.chain.gz26-Jun-2013 14:32 81M 
[   ]hg19ToPanHod1.over.chain.gz17-Jul-2013 07:05 82M 
[   ]hg19ToPanPan1.over.chain.gz15-Jul-2013 19:26 14M 
[   ]hg19ToPanTig1.over.chain.gz11-Sep-2013 01:49 86M 
[   ]hg19ToPanTro2.over.chain.gz19-Mar-2009 23:34 13M 
[   ]hg19ToPanTro3.over.chain.gz22-Feb-2011 16:33 13M 
[   ]hg19ToPanTro4.over.chain.gz25-Jan-2013 14:29 13M 
[   ]hg19ToPapAnu2.over.chain.gz19-Aug-2013 23:49 35M 
[   ]hg19ToPapHam1.over.chain.gz20-May-2009 17:56 40M 
[   ]hg19ToPelSin1.over.chain.gz29-Aug-2013 23:09 9.6M 
[   ]hg19ToPetMar1.over.chain.gz14-May-2009 11:24 3.0M 
[   ]hg19ToPetMar2.over.chain.gz17-Oct-2012 12:59 2.8M 
[   ]hg19ToPhyCat1.over.chain.gz05-Oct-2013 20:59 81M 
[   ]hg19ToPonAbe2.over.chain.gz14-May-2009 03:22 26M 
[   ]hg19ToProCap1.over.chain.gz26-May-2009 12:27 64M 
[   ]hg19ToPseHum1.over.chain.gz29-Jun-2013 18:50 8.3M 
[   ]hg19ToPteAle1.over.chain.gz01-Sep-2013 00:23 79M 
[   ]hg19ToPteVam1.over.chain.gz04-Jun-2009 09:50 75M 
[   ]hg19ToPunNye1.over.chain.gz03-Sep-2013 01:06 2.8M 
[   ]hg19ToRheMac2.over.chain.gz14-May-2009 08:53 34M 
[   ]hg19ToRheMac3.over.chain.gz04-Jul-2013 13:47 36M 
[   ]hg19ToRn4.over.chain.gz13-May-2009 20:44 70M 
[   ]hg19ToRn5.over.chain.gz27-Jun-2012 17:52 67M 
[   ]hg19ToRn6.over.chain.gz08-Jun-2015 13:42 67M 
[   ]hg19ToSaiBol1.over.chain.gz30-Jun-2013 17:42 48M 
[   ]hg19ToSarHar1.over.chain.gz10-Jul-2013 13:00 16M 
[   ]hg19ToSorAra1.over.chain.gz29-May-2009 08:40 46M 
[   ]hg19ToSorAra2.over.chain.gz18-Jun-2013 16:24 58M 
[   ]hg19ToSpeTri1.over.chain.gz04-Jun-2009 20:15 69M 
[   ]hg19ToSpeTri2.over.chain.gz28-Aug-2013 23:27 87M 
[   ]hg19ToSusScr1.over.chain.gz22-Jan-2010 06:34 71M 
[   ]hg19ToSusScr2.over.chain.gz27-Mar-2010 02:13 71M 
[   ]hg19ToSusScr3.over.chain.gz29-Aug-2013 00:59 79M 
[   ]hg19ToTaeGut1.over.chain.gz26-May-2009 13:04 7.2M 
[   ]hg19ToTaeGut2.over.chain.gz17-Jun-2013 23:33 13M 
[   ]hg19ToTakFla1.over.chain.gz31-Aug-2013 04:44 2.5M 
[   ]hg19ToTarSyr1.over.chain.gz15-May-2009 16:52 78M 
[   ]hg19ToTarSyr2.over.chain.gz16-Dec-2014 09:23 82M 
[   ]hg19ToTetNig1.over.chain.gz14-May-2009 13:41 4.9M 
[   ]hg19ToTetNig2.over.chain.gz10-Aug-2009 14:17 4.0M 
[   ]hg19ToTriMan1.over.chain.gz11-Jul-2013 07:16 77M 
[   ]hg19ToTupBel1.over.chain.gz01-Jun-2009 11:22 69M 
[   ]hg19ToTupChi1.over.chain.gz06-Jul-2013 12:15 80M 
[   ]hg19ToTurTru1.over.chain.gz04-Jun-2009 13:51 77M 
[   ]hg19ToTurTru2.over.chain.gz20-Aug-2013 04:12 83M 
[   ]hg19ToVicPac1.over.chain.gz04-Jun-2009 22:02 67M 
[   ]hg19ToVicPac2.over.chain.gz18-Jun-2013 04:10 80M 
[   ]hg19ToXenTro2.over.chain.gz27-May-2009 11:15 7.5M 
[   ]hg19ToXenTro3.over.chain.gz20-Sep-2011 17:11 7.1M 
[   ]hg19ToXenTro7.over.chain.gz28-Aug-2013 19:52 7.3M 
[   ]hg19ToXipMac1.over.chain.gz28-Aug-2013 10:01 4.4M 
[   ]hg19ToZonAlb1.over.chain.gz26-Jun-2013 17:47 7.2M 
[TXT]md5sum.txt19-Aug-2016 04:12 7.5K 
[TXT]md5sum.txt.full21-Jul-2009 19:47 3.0K 

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