This directory contains a dump of the UCSC genome hgFixed
database. The data is updated nightly. The .txt.gz files contain
the database tables in a tab-delimited format compressed with gzip.
The .sql files contain the MySQL commands to create the tables.
The hgFixed database contains tables with information that is not
tied to a specific genome assembly, for example expression values
associated with probe IDs (as opposed to genomic coordinates in
some assembly). Many of the tables in this database are used by
tracks in more than one assembly's Genome Browser.
To see descriptions of the tables in hgFixed, visit the Table Browser:
select "All Tables" as the group, select hgFixed as the database,
and select a table. Then click the "describe table schema" button.
If you plan to download a large file or multiple files from
this directory, we recommend you use ftp rather than downloading
the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/hg16/database. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely usable for any
purpose except for the following:
affy10KDetails.txt, affy120KDetails.txt, affyExps.txt,
affyGenoDetails.txt - See the Affymetrix, Inc. web site at
(http://www.affymetrix.com/site/terms.affx) for the
terms and conditions of the use of data in the this table.
Apache/2.2.15 (CentOS) Server at hgdownload-test.sdsc.edu Port 80