This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
mm10ToHg19.over.chain.gz file contains the liftOver data needed to
convert mm10 (Mouse GRCm38) coordinates to hg19 (Human GRCh37).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/mm10/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/mm10/liftOver/ .
For a single file, e.g. mm10ToHg19.over.chain.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/mm10/liftOver/mm10ToHg19.over.chain.gz .
    (Hg19 is merely an example here, not necessarily existing.)

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/mm10/liftOver/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/mm10/liftOver/mm10ToHg19.over.chain.gz'  
        -O mm10ToHg19.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz 
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

------------------------------------------------------------------
This file last updated: 2012-02-09 - 09 February 2012
------------------------------------------------------------------
[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt23-Oct-2012 16:36 2.4K 
[TXT]md5sum.txt04-Aug-2017 12:43 6.6K 
[   ]mm10ToAilMel1.over.chain.gz20-Mar-2012 17:04 62M 
[   ]mm10ToAnoCar2.over.chain.gz03-Apr-2012 11:38 6.8M 
[   ]mm10ToAquChr2.over.chain.gz16-Mar-2017 18:37 7.7M 
[   ]mm10ToBisBis1.over.chain.gz17-Mar-2017 20:24 53M 
[   ]mm10ToBosTau6.over.chain.gz19-Jun-2012 12:57 53M 
[   ]mm10ToBosTau7.over.chain.gz22-Mar-2012 10:45 53M 
[   ]mm10ToBosTau8.over.chain.gz16-Oct-2014 12:15 53M 
[   ]mm10ToCalJac3.over.chain.gz09-Mar-2012 19:02 63M 
[   ]mm10ToCanFam3.over.chain.gz20-Mar-2012 16:40 58M 
[   ]mm10ToCavPor3.over.chain.gz17-Mar-2012 10:59 58M 
[   ]mm10ToCerSim1.over.chain.gz24-Oct-2012 06:10 68M 
[   ]mm10ToChoHof1.over.chain.gz22-Mar-2012 10:16 41M 
[   ]mm10ToChrPic1.over.chain.gz30-Mar-2012 11:59 9.5M 
[   ]mm10ToChrPic2.over.chain.gz06-Apr-2017 13:26 7.8M 
[   ]mm10ToColAng1.over.chain.gz28-Feb-2017 14:52 66M 
[   ]mm10ToCriGri1.over.chain.gz12-May-2017 12:10 85M 
[   ]mm10ToCriGriChoV1.over.chain.gz13-Apr-2017 21:12 83M 
[   ]mm10ToDanRer7.over.chain.gz03-Apr-2012 10:51 5.8M 
[   ]mm10ToDanRer10.over.chain.gz11-Sep-2015 16:28 6.3M 
[   ]mm10ToDanRer11.over.chain.gz12-Jun-2017 17:04 3.8M 
[   ]mm10ToDasNov2.over.chain.gz23-Mar-2012 12:02 39M 
[   ]mm10ToDasNov3.over.chain.gz14-Apr-2012 04:58 52M 
[   ]mm10ToDipOrd1.over.chain.gz16-Mar-2012 04:46 43M 
[   ]mm10ToEchTel1.over.chain.gz24-Mar-2012 14:15 27M 
[   ]mm10ToEchTel2.over.chain.gz13-Jun-2013 05:34 30M 
[   ]mm10ToEquCab2.over.chain.gz16-Mar-2012 16:38 66M 
[   ]mm10ToEriEur1.over.chain.gz24-Mar-2012 13:36 25M 
[   ]mm10ToFelCat4.over.chain.gz20-Mar-2012 18:34 49M 
[   ]mm10ToFelCat5.over.chain.gz14-Apr-2012 03:30 59M 
[   ]mm10ToFr3.over.chain.gz03-Apr-2012 13:13 3.8M 
[   ]mm10ToGadMor1.over.chain.gz03-Apr-2012 16:50 4.4M 
[   ]mm10ToGalGal4.over.chain.gz03-Apr-2012 10:43 7.1M 
[   ]mm10ToGalGal5.over.chain.gz20-Apr-2016 12:33 7.5M 
[   ]mm10ToGalVar1.over.chain.gz26-Apr-2016 14:27 70M 
[   ]mm10ToGasAcu1.over.chain.gz03-Apr-2012 10:36 4.3M 
[   ]mm10ToGeoFor1.over.chain.gz29-Jul-2012 14:49 7.1M 
[   ]mm10ToGorGor3.over.chain.gz08-Mar-2012 23:14 65M 
[   ]mm10ToGorGor5.over.chain.gz04-Aug-2017 11:58 68M 
[   ]mm10ToHetGla1.over.chain.gz16-Mar-2012 02:31 64M 
[   ]mm10ToHetGla2.over.chain.gz14-Apr-2012 22:13 65M 
[   ]mm10ToHg19.over.chain.gz08-Mar-2012 11:57 74M 
[   ]mm10ToHg38.over.chain.gz10-Apr-2015 12:46 67M 
[   ]mm10ToLatCha1.over.chain.gz03-Apr-2012 15:49 5.8M 
[   ]mm10ToLoxAfr3.over.chain.gz20-Mar-2012 15:38 51M 
[   ]mm10ToMacEug2.over.chain.gz24-Mar-2012 11:54 12M 
[   ]mm10ToMacNem1.over.chain.gz28-Feb-2017 14:40 67M 
[   ]mm10ToManPen1.over.chain.gz16-Mar-2017 02:11 56M 
[   ]mm10ToMelGal1.over.chain.gz03-Apr-2012 11:53 7.0M 
[   ]mm10ToMelGal5.over.chain.gz19-Jan-2017 12:24 7.5M 
[   ]mm10ToMelUnd1.over.chain.gz30-Mar-2012 04:25 7.1M 
[   ]mm10ToMicMur1.over.chain.gz13-Mar-2012 22:10 55M 
[   ]mm10ToMicMur3.over.chain.gz05-Mar-2017 02:29 66M 
[   ]mm10ToMicOch1.over.chain.gz16-May-2014 20:13 82M 
[   ]mm10ToMm9.over.chain.gz30-Apr-2012 21:52 940K 
[   ]mm10ToMonDom5.over.chain.gz30-Mar-2012 19:24 20M 
[   ]mm10ToMyoLuc2.over.chain.gz22-Mar-2012 09:03 49M 
[   ]mm10ToNomLeu1.over.chain.gz08-Mar-2012 22:47 66M 
[   ]mm10ToNomLeu2.over.chain.gz14-Apr-2012 21:16 65M 
[   ]mm10ToOchPri2.over.chain.gz24-Mar-2012 06:12 33M 
[   ]mm10ToOrcOrc1.over.chain.gz15-Jun-2017 13:33 61M 
[   ]mm10ToOreNil1.over.chain.gz03-Apr-2012 10:54 4.2M 
[   ]mm10ToOreNil2.over.chain.gz11-Apr-2012 10:56 4.2M 
[   ]mm10ToOreNil3.over.chain.gz31-Jul-2017 13:58 4.3M 
[   ]mm10ToOrnAna1.over.chain.gz30-Mar-2012 12:18 11M 
[   ]mm10ToOryCun2.over.chain.gz17-Mar-2012 15:22 51M 
[   ]mm10ToOryLat2.over.chain.gz03-Apr-2012 15:15 4.2M 
[   ]mm10ToOtoGar3.over.chain.gz13-Mar-2012 22:13 59M 
[   ]mm10ToOviAri1.over.chain.gz22-Mar-2012 06:52 32M 
[   ]mm10ToOviAri3.over.chain.gz08-Jan-2015 12:26 33M 
[   ]mm10ToPanPan2.over.chain.gz24-May-2016 18:07 67M 
[   ]mm10ToPanTro3.over.chain.gz12-Mar-2012 09:06 67M 
[   ]mm10ToPanTro4.over.chain.gz10-Mar-2012 03:36 66M 
[   ]mm10ToPanTro5.over.chain.gz04-Aug-2016 02:48 67M 
[   ]mm10ToPapAnu3.over.chain.gz22-Jun-2017 06:05 66M 
[   ]mm10ToPapHam1.over.chain.gz10-Mar-2012 03:12 67M 
[   ]mm10ToPelSin1.over.chain.gz10-May-2016 13:22 8.6M 
[   ]mm10ToPetMar1.over.chain.gz03-Apr-2012 15:51 2.8M 
[   ]mm10ToPetMar2.over.chain.gz19-Oct-2012 19:12 2.6M 
[   ]mm10ToPonAbe2.over.chain.gz09-Mar-2012 08:43 67M 
[   ]mm10ToProCap1.over.chain.gz23-Mar-2012 15:53 35M 
[   ]mm10ToPteVam1.over.chain.gz20-Mar-2012 15:44 56M 
[   ]mm10ToRheMac2.over.chain.gz23-May-2014 17:43 65M 
[   ]mm10ToRheMac3.over.chain.gz11-Jul-2012 04:40 65M 
[   ]mm10ToRheMac8.over.chain.gz10-Feb-2016 12:51 66M 
[   ]mm10ToRn4.over.chain.gz08-Mar-2012 14:22 52M 
[   ]mm10ToRn5.over.chain.gz26-Mar-2012 12:53 64M 
[   ]mm10ToRn6.over.chain.gz07-Apr-2016 16:17 74M 
[   ]mm10ToSaiBol1.over.chain.gz09-Mar-2012 19:20 63M 
[   ]mm10ToSarHar1.over.chain.gz30-Mar-2012 10:30 18M 
[   ]mm10ToSorAra1.over.chain.gz24-Mar-2012 06:58 23M 
[   ]mm10ToSorAra2.over.chain.gz13-Jun-2013 01:47 28M 
[   ]mm10ToSpeTri2.over.chain.gz16-Mar-2012 05:26 67M 
[   ]mm10ToSusScr2.over.chain.gz17-Mar-2012 12:53 47M 
[   ]mm10ToSusScr3.over.chain.gz14-Apr-2012 04:18 52M 
[   ]mm10ToSusScr11.over.chain.gz31-Jul-2017 17:20 55M 
[   ]mm10ToTaeGut1.over.chain.gz03-Apr-2012 11:04 7.2M 
[   ]mm10ToTarSyr1.over.chain.gz12-Mar-2012 05:15 53M 
[   ]mm10ToTarSyr2.over.chain.gz27-Mar-2015 14:59 64M 
[   ]mm10ToTetNig2.over.chain.gz02-Apr-2012 22:47 3.7M 
[   ]mm10ToTriMan1.over.chain.gz30-Mar-2012 12:53 53M 
[   ]mm10ToTupBel1.over.chain.gz17-Mar-2012 20:42 44M 
[   ]mm10ToTupChi1.over.chain.gz09-Mar-2017 16:18 51M 
[   ]mm10ToTurTru1.over.chain.gz17-Mar-2012 16:30 58M 
[   ]mm10ToTurTru2.over.chain.gz14-Apr-2012 21:26 62M 
[   ]mm10ToVicPac1.over.chain.gz17-Mar-2012 20:22 47M 
[   ]mm10ToVicPac2.over.chain.gz20-Jun-2013 19:44 59M 
[   ]mm10ToXenLae2.over.chain.gz30-Mar-2017 09:39 6.3M 
[   ]mm10ToXenTro3.over.chain.gz03-Apr-2012 12:21 6.6M 
[   ]mm10ToXenTro9.over.chain.gz30-Mar-2017 10:16 6.8M 

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