This directory contains a dump of the UCSC genome annotation 
database for the Build 30 assembly of the mouse genome (mm3,
Feb. 2003) from the Mouse Genome Sequencing Consortium. The 
directory is updated nightly. 

Files included in this directory:
  - *.sql files: the MySQL commands used to create the tables. 
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=mm3
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files:  the database tables in a tab-delimited 
    format compressed with gzip. 

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/mm3/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables are freely usable for any purpose except for the 
following:

   Swiss-Prot data in knownGene.txt - The Swiss-Prot entries in the
	Known Genes annotation track are copyrighted. They are 
	produced through a collaboration between the Swiss Institute 
	of Bioinformatics and the EMBL Outstation - the European 
	Bioinformatics Institute. There are no restrictions on their 
	use by  non-profit institutions as long as their content is 
	in no way modified and this statement is not removed. Usage 
	by and for commercial entities requires a license agreement 
	(see http://www.isb-sib.ch/announce/ or send an email to 
	license@isb-sib.ch).

   softberryGene.txt and softberryPep.txt -  Free for academic and
       nonprofit use. Commercial users should contact Softberry, Inc. 
       at http://www.softberry.com.
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