This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
mm8ToHg18.over.chain.gz file contains the liftOver data needed to
convert mm8 (Mouse Build 36) coordinates to hg18 (Human Build 36).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/mm8/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/mm8/liftOver/ .
For a single file, e.g. mm8ToHg18.over.chain.gz
    rsync -avzP \
        rsync://hgdownload.cse.ucsc.edu/goldenPath/mm8/liftOver/mm8ToHg18.over.chain.gz .

Or with wget, all files:
    wget --timestamping \
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/mm8/liftOver/*'
With wget, a single file:
    wget --timestamping \
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/mm8/liftOver/mm8ToHg18.over.chain.gz' \
        -O mm8ToHg18.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

This file last updated: 2007-07-26 - 26 July 2007
[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt01-Dec-2008 15:33 2.2K 
[TXT]md5sum.txt02-May-2012 12:27 1.2K 
[   ]mm8ToAnoCar1.over.chain.gz20-Feb-2007 02:38 7.9M 
[   ]mm8ToBosTau2.over.chain.gz18-Feb-2006 08:06 54M 
[   ]mm8ToBosTau3.over.chain.gz23-Mar-2007 07:30 52M 
[   ]mm8ToCanFam2.over.chain.gz18-Feb-2006 06:59 64M 
[   ]mm8ToDanRer3.over.chain.gz28-Feb-2006 16:08 4.7M 
[   ]mm8ToDanRer4.over.chain.gz23-May-2006 21:57 5.0M 
[   ]mm8ToDasNov1.over.chain.gz20-Feb-2006 22:31 39M 
[   ]mm8ToEchTel1.over.chain.gz20-Feb-2006 22:34 27M 
[   ]mm8ToEquCab1.over.chain.gz21-Feb-2007 20:00 66M 
[   ]mm8ToFelCat3.over.chain.gz15-Nov-2006 09:52 42M 
[   ]mm8ToFr1.over.chain.gz19-Feb-2006 21:03 4.2M 
[   ]mm8ToGalGal2.over.chain.gz20-Feb-2006 22:13 4.8M 
[   ]mm8ToGalGal3.over.chain.gz24-May-2006 12:28 5.6M 
[   ]mm8ToGasAcu1.over.chain.gz23-Oct-2006 12:43 4.4M 
[   ]mm8ToHg17.over.chain.gz14-Apr-2006 02:05 73M 
[   ]mm8ToHg18.over.chain.gz17-Feb-2006 13:40 72M 
[   ]mm8ToLoxAfr1.over.chain.gz20-Feb-2006 21:57 42M 
[   ]mm8ToMm7.over.chain.gz24-Apr-2006 12:31 2.4M 
[   ]mm8ToMm9.over.chain.gz05-Aug-2010 14:32 166K 
[   ]mm8ToMm10.over.chain.gz01-May-2012 10:41 273K 
[   ]mm8ToMonDom4.over.chain.gz24-Feb-2006 10:14 16M 
[   ]mm8ToOrnAna1.over.chain.gz02-Mar-2007 14:48 12M 
[   ]mm8ToOryCun1.over.chain.gz22-Feb-2006 02:16 43M 
[   ]mm8ToPanTro1.over.chain.gz24-Feb-2006 01:35 66M 
[   ]mm8ToPanTro2.over.chain.gz29-Mar-2006 14:51 71M 
[   ]mm8ToRheMac2.over.chain.gz17-Feb-2006 23:43 65M 
[   ]mm8ToRn4.over.chain.gz19-Feb-2006 12:31 70M 
[   ]mm8ToTetNig1.over.chain.gz20-Feb-2006 12:55 4.4M 
[   ]mm8ToXenTro1.over.chain.gz23-Feb-2006 12:11 4.8M 
[   ]mm8ToXenTro2.over.chain.gz20-Apr-2006 23:07 5.4M 

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