This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
mm9ToHg18.over.chain.gz file contains the liftOver data needed to
convert mm9 (Mouse Build 37) coordinates to hg18 (Human Build 36).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/mm9/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/ .
For a single file, e.g. mm8ToHg18.over.chain.gz
    rsync -avzP \
        rsync://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/mm9ToHg18.over.chain.gz .

Or with wget, all files:
    wget --timestamping \
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/*'
With wget, a single file:
    wget --timestamping \
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/mm9ToHg18.over.chain.gz' \
        -O mm9ToHg18.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

This file last updated: 2007-07-26 - 26 July 2007
[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt01-Dec-2008 11:21 2.2K 
[TXT]md5sum.txt25-Sep-2015 20:54 2.8K 
[   ]mm9ToAilMel1.over.chain.gz04-Feb-2010 18:51 55M 
[   ]mm9ToAnoCar1.over.chain.gz21-Sep-2007 11:57 7.0M 
[   ]mm9ToAnoCar2.over.chain.gz25-Apr-2011 17:45 6.8M 
[   ]mm9ToBosTau3.over.chain.gz25-Sep-2007 22:47 53M 
[   ]mm9ToBosTau4.over.chain.gz11-Mar-2008 23:13 52M 
[   ]mm9ToBosTau6.over.chain.gz17-May-2011 10:59 53M 
[   ]mm9ToBosTau7.over.chain.gz22-Jan-2012 18:09 53M 
[   ]mm9ToBraFlo1.over.chain.gz14-Apr-2008 14:08 2.4M 
[   ]mm9ToCalJac1.over.chain.gz06-Sep-2007 20:01 65M 
[   ]mm9ToCalJac3.over.chain.gz12-Feb-2010 20:27 63M 
[   ]mm9ToCanFam2.over.chain.gz05-Sep-2007 02:12 65M 
[   ]mm9ToCanFam3.over.chain.gz25-Sep-2015 20:15 58M 
[   ]mm9ToCavPor2.over.chain.gz21-Sep-2007 03:07 42M 
[   ]mm9ToCavPor3.over.chain.gz11-Apr-2008 18:06 58M 
[   ]mm9ToDanRer5.over.chain.gz13-Sep-2007 21:00 6.4M 
[   ]mm9ToDanRer6.over.chain.gz18-Dec-2009 15:29 6.3M 
[   ]mm9ToDanRer7.over.chain.gz17-Dec-2010 13:11 5.8M 
[   ]mm9ToDasNov1.over.chain.gz02-Oct-2007 04:54 38M 
[   ]mm9ToEchTel1.over.chain.gz27-Sep-2007 11:53 28M 
[   ]mm9ToEquCab1.over.chain.gz25-Sep-2007 07:06 66M 
[   ]mm9ToEquCab2.over.chain.gz01-Jul-2009 12:13 66M 
[   ]mm9ToEriEur1.over.chain.gz02-Oct-2007 14:48 25M 
[   ]mm9ToFelCat3.over.chain.gz29-Sep-2007 17:29 42M 
[   ]mm9ToFelCat4.over.chain.gz08-Jun-2010 17:55 49M 
[   ]mm9ToFr2.over.chain.gz07-Sep-2007 12:14 3.7M 
[   ]mm9ToGalGal3.over.chain.gz25-Sep-2007 10:41 7.4M 
[   ]mm9ToGalGal4.over.chain.gz25-Sep-2015 19:18 7.2M 
[   ]mm9ToGasAcu1.over.chain.gz07-Sep-2007 15:29 3.9M 
[   ]mm9ToHg18.over.chain.gz15-Aug-2007 11:33 74M 
[   ]mm9ToHg19.over.chain.gz14-May-2009 10:40 74M 
[   ]mm9ToLoxAfr1.over.chain.gz01-Oct-2007 22:45 41M 
[   ]mm9ToLoxAfr3.over.chain.gz12-Aug-2009 20:24 52M 
[   ]mm9ToMelGal1.over.chain.gz30-Mar-2011 09:30 4.5M 
[   ]mm9ToMm8.over.chain.gz05-Nov-2007 17:53 1.2M 
[   ]mm9ToMm10.over.chain.gz09-Feb-2012 12:07 523K 
[   ]mm9ToMonDom4.over.chain.gz26-Sep-2007 22:15 20M 
[   ]mm9ToMonDom5.over.chain.gz31-Aug-2009 20:20 20M 
[   ]mm9ToOrnAna1.over.chain.gz25-Sep-2007 00:40 12M 
[   ]mm9ToOryCun1.over.chain.gz29-Sep-2007 17:33 43M 
[   ]mm9ToOryCun2.over.chain.gz15-Jan-2010 18:41 51M 
[   ]mm9ToOryLat1.over.chain.gz31-Aug-2007 10:33 4.1M 
[   ]mm9ToOryLat2.over.chain.gz27-Aug-2008 10:45 4.2M 
[   ]mm9ToOtoGar1.over.chain.gz28-Sep-2007 12:02 50M 
[   ]mm9ToOviAri1.over.chain.gz16-Apr-2010 11:51 32M 
[   ]mm9ToPanTro2.over.chain.gz25-Sep-2007 03:12 72M 
[   ]mm9ToPanTro3.over.chain.gz08-Mar-2011 09:49 67M 
[   ]mm9ToPetMar1.over.chain.gz14-Apr-2008 17:18 2.8M 
[   ]mm9ToPonAbe1.over.chain.gz07-Sep-2007 12:44 68M 
[   ]mm9ToPonAbe2.over.chain.gz20-Sep-2007 12:35 67M 
[   ]mm9ToRheMac2.over.chain.gz06-Sep-2007 12:10 75M 
[   ]mm9ToRheMac3.over.chain.gz20-Mar-2012 02:49 65M 
[   ]mm9ToRn4.over.chain.gz31-Aug-2007 16:24 57M 
[   ]mm9ToRn5.over.chain.gz21-Mar-2013 10:43 59M 
[   ]mm9ToSorAra1.over.chain.gz30-Sep-2007 16:45 23M 
[   ]mm9ToSusScr1.over.chain.gz22-Jan-2010 04:30 47M 
[   ]mm9ToSusScr2.over.chain.gz27-Mar-2010 01:04 47M 
[   ]mm9ToTetNig1.over.chain.gz07-Sep-2007 12:19 3.7M 
[   ]mm9ToTetNig2.over.chain.gz15-Sep-2009 15:59 3.6M 
[   ]mm9ToTupBel1.over.chain.gz28-Sep-2007 12:09 47M 
[   ]mm9ToXenTro2.over.chain.gz21-Sep-2007 15:53 6.6M 
[   ]mm9ToXenTro3.over.chain.gz20-Sep-2011 17:25 6.5M 

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