This directory contains a dump of the UCSC genome annotation
database for the Nov. 2004 update of the rat genome (rn4, version 3.4) 
from the Rat Genome Sequencing Consortium. This assembly was produced 
at the Baylor College of Medicine Human Genome Seuqencing Center. 
For more information on the rat genome, see the Baylor Rat Genome 
Project website at http://www.hgsc.bcm.tmc.edu/.  

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=rn4
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/rn4/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files and tables in this directory are freely usable for any 
purpose except for the following:

   softberryGene.txt and softberryPep.txt -  Free for academic 
        and nonprofit use. Commercial users should contact
        Softberry, Inc. at http://www.softberry.com.

   Swiss-Prot/UniProt data in knownGene.txt - 
        UniProt copyright (c) 2002 - 2004 UniProt consortium

        For non-commercial use all databases and documents in the UniProt FTP
        directory may be copied and redistributed freely, without advance 
        permission, provided that this copyright statement is reproduced with 
        each copy. 
        
        For commercial use all databases and documents in the UniProt FTP 
        directory, except the files
        
        ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz
        
        and
        
        ftp://ftp.uniprot.org/pub/databases/uniprot/knowledgebase/uniprot_sprot.xml.gz
        
        may be copied and redistributed freely, without advance permission, 
        provided that this copyright statement is reproduced with each copy.
        
        More information for commercial users can be found in:
        http://www.expasy.org/announce/sp_98.html
        
        From January 1, 2005, all databases and documents in the UniProt FTP 
        directory may be copied and redistributed freely by all entities, 
        without advance permission, provided that this copyright statement is 
        reproduced with each copy. 


[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt09-Apr-2008 22:46 2.8K 
[TXT]README.txt.bak30-Jan-2006 17:03 2.6K 

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