This directory contains download files of the Saccharomyces
cerevisiae genome sequence and associated annotations. The data
is based on sequence dated 1 Oct. 2003 in the Saccharomyces Genome
Database (http://www.yeastgenome.org/) and was obtained from the site
S288C strain was used in this sequencing project.
Files included in this directory:
sacCer1.2bit - contains the complete S. cerevisiae/sacCer1 genome sequence
in the 2bit file format. While we are providing the .2bit for
this assembly, we will continue to use the .nib files in
the Genome Browser. No masking has been applied to these sequences.
The utility program, twoBitToFa (available from the kent src tree),
can be used to extract .fa file(s) from this file. A pre-compiled version
of the command line tool can be found at:
chromFa.zip - The working draft sequence in one file per chromosome.
(No masking of repetitive sequences.)
est.fa.gz - Yeast EST sequences deposited into GenBank.
mrna.zip - Yeast mRNA from GenBank.
multizYeast.zip - Multiple alignments done with Webb Miller's
multiz program on seven species of Saccharomyces in .maf format.
For a description of the multiple alignment format (MAF), see
sacCer1.chrom.sizes - Two-column tab-separated text file containing assembly
sequence names and sizes.
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/sacCer1/bigZips. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the tables in this directory are freely available for public use.
Apache/2.2.15 (CentOS) Server at hgdownload-test.sdsc.edu Port 80